AChemKit.tools.chem_to_dot — AChemKit v0.1 documentation

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# AChemKit.tools.chem_to_dot

`AChemKit.tools.` `chem_to_dot`

  Produces a .dot output from a provided .chem format input

  The output files in .dot format are suitable for future processing using Graphviz tools. In particular, they are constructed using `AChemKit.utils.simpledot.SimpleDot`.

  For information in .chem files see .chem Format.

  Usage: chem_to_dot.py [options]

  Options:

  > `-h, --help` | Show a help message and exit
  > `-i INFILE, --infile=INFILE`
  > | Read from INFILE (if ommited, use stdin)
  > `-o OUTFILE, --outfile=OUTFILE`
  > | Write to OUTFILE in .chem format (if ommited, use stdout)
  > `-n NAMES, --names`
  > | Style of molecular species naming. One of ‘full’, ‘id’, ‘blank’

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